HitPredict

Downloads

All interactions for 9 species can be downloaded from the table below. Interactions are divided into 3 categories:
  1. High confidence small-scale binary interactions - Interactions directly detected in small scale experiments, eg. Y2H experiments, identifying less than 100 interactions. These are considered as high-confidence.

  2. High confidence interactions based on reliability score - Interactions obtained from high-throughput experiments or derived from protein complex data (using the spoke model). These interactions have a reliability or likelihood ratio > 1 and are predicted to be true.

  3. Low confidence interactions based on reliability score - Interactions obtained from high-throughput experiments or derived from protein complex information but lacking support from genomic features. These interactions have a reliability or likelihood ratio < 1 and are predicted to be spurious


The total number of interactions, given below each species in brackets, is a sum of these 3 types of interactions.

Species
(# of interactions)
High confidence interactions Low confidence interactions
Small-scale binary Predicted true
S. cerevisiae
(76659)
S_cerevisiae_ss.tar.gz S_cerevisiae_hc.tar.gz S_cerevisiae_spurious.tar.gz
H. sapiens
(69019*)
H_sapiens_ss.tar.gz H_sapiens_hc.tar.gz H_sapiens_spurious.tar.gz
D. melanogaster
(21632)
D_melanogaster_ss.tar.gz D_melanogaster_hc.tar.gz D_melanogaster_spurious.tar.gz
E. coli
(13440)
E_coli_ss.tar.gz E_coli_hc.tar.gz E_coli_spurious.tar.gz
C. elegans
(8095)
C_elegans_ss.tar.gz C_elegans_hc.tar.gz C_elegans_spurious.tar.gz
A. thaliana
(15963)
A_thaliana_ss.tar.gz A_thaliana_hc.tar.gz A_thaliana_spurious.tar.gz
M. musculus
(6752)
M_musculus_ss.tar.gz M_musculus_hc.tar.gz M_musculus_spurious.tar.gz
R. norvegicus
(1860)
R_norvegicus_ss.tar.gz R_norvegicus_hc.tar.gz R_norvegicus_spurious.tar.gz
S. pombe
(2568)
S_pombe_ss.tar.gz S_pombe_hc.tar.gz S_pombe_spurious.tar.gz
* 23596 human interactions from HPRD are not available for download due to copyright restrictions.

Last updated: 1 May 2012